Data quality metrics extracted from 7zyt.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7ZYT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-10-23
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9184
Software
Data collection
_software.classification
MxCuBE
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
MOLREP (11.7.03; 13.07.2020)
Refinement
_software.classification
PHENIX (1.14)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
188.65 59.00 83.23 90.0 101.4 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91840 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
44.140 44.139 3.050
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.880 8.500 2.880
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.182 0.032 2.984
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.198 0.035 3.253
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 4603 18568
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
20384 836 3006
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.37 41.92 0.57
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.3 97.4 91.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.4 5.5 6.2
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.999 0.354

Refinement
PDB entry ID
_entry.id
7ZYT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-05-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
44.1 - 2.892 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2504 / 0.2870
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
6I4Q