Data quality metrics extracted from 8zoj.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8ZOJ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NFPSS BEAMLINE BL18U
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NFPSS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL18U
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2019-05-01
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.14_3260: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
42.769 58.212 105.076 77.85 81.30 68.46
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 30.000 3.090
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.910 8.590 2.910
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.078 0.029 1.594
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.111 0.040 0.929
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
20090 182 1006
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
4.03 - -
Completeness [%]
_reflns.percent_possible_obs
98.1 - -
Multiplicity
_reflns.pdbx_redundancy
3.4 - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.996 0.127

Refinement
PDB entry ID
_entry.id
8ZOJ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-05-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.1 - 2.913 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2413 / 0.2619
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given