Data quality metrics extracted from 4zgd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4ZGD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-10-29
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.20)
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.8.4_1496)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
111.590 111.590 474.604 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.491 50.559 2.370
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.250 7.120 2.250
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.156 0.052 0.724
Rmeas
_reflns.pdbx_Rrim_I_all
0.182 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.093 0.031 0.432
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
1185275 38033 171800
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
313740 9947 45888
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.90 10.00 1.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.7 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.8 3.8 3.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4ZGD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-04-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.5 - 2.250 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1725 / 0.2032