Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | MAX II BEAMLINE I911-3 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | MAX II Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | I911-3 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2013-09-25 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 225 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.0 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS (March 30, 2013) The classification of the program according to its |
Data scaling _software.classification | XSCALE (July 4, 2012 BUILT=20130706) The classification of the program according to its |
Phasing _software.classification | PHASER (2.5.7) The classification of the program according to its |
Refinement _software.classification | PHENIX The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 67.03 Unit-cell length a corresponding to the structure reported in 81.70 Unit-cell length b corresponding to the structure reported in 124.56 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.00000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 29.515 The largest value in angstroms for the interplanar spacings | 29.515 The highest value in angstroms for the interplanar spacings | 2.330 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.250 The smallest value in angstroms for the interplanar spacings | 10.060 The smallest value in angstroms for the interplanar spacings | 2.250 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.143 The R value for merging intensities satisfying the observed | 0.021 The value of Rmerge(I) for reflections classified as 'observed' | 1.433 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.158 The redundancy-independent merging R factor value Rrim, | 0.026 The redundancy-independent merging R factor value Rrim, | 1.694 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 155085 Total number of measured reflections. | 1711 The number of reflections classified as 'observed' | 6269 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 32041 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 658 The total number of measured reflections classified as 'observed' | 3467 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 7.33 The mean of the ratio of the intensities to their | 30.18 The ratio of the mean of the intensities of the reflections | 0.64 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 97.0 The percentage of geometrically possible reflections represented | 93.2 The percentage of geometrically possible reflections represented | 81.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.8 Overall redundancy for this data set. | - | 3.7 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4Z6A |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2015-04-04 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 29.5 - 2.250 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1882 / 0.2405 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | In-House FVIIa-WT:sTF-FFR similar to 1DAN |