Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | EMBL/DESY, HAMBURG BEAMLINE X11 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | EMBL/DESY, HAMBURG Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | X11 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2009-10-27 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 225 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.9120 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | COMBAT The classification of the program according to its |
Data scaling _software.classification | SCALA (3.3.16) The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement _software.classification | REFMAC (5.8.0158) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 43 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 62.076 Unit-cell length a corresponding to the structure reported in 62.076 Unit-cell length b corresponding to the structure reported in 275.789 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91200 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 46.133 The largest value in angstroms for the interplanar spacings | 46.133 The highest value in angstroms for the interplanar spacings | 1.790 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.643 The smallest value in angstroms for the interplanar spacings | 5.380 The smallest value in angstroms for the interplanar spacings | 1.700 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs | 0.080 The R sym value as a decimal number. | 0.048 The value of Rmerge(I) for reflections classified as 'observed' | 0.386 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.091 The redundancy-independent merging R factor value Rrim, | 0.055 The redundancy-independent merging R factor value Rrim, | 0.470 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.042 The precision-indicating merging R factor value Rpim, | 0.025 The precision-indicating merging R factor value Rpim, | 0.262 The precision-indicating merging R factor value Rpim, |
Total number of observations | - | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 60040 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2062 The total number of measured reflections classified as 'observed' | 8505 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 12.00 The mean of the ratio of the intensities to their | 10.10 The ratio of the mean of the intensities of the reflections | 2.00 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.0 The percentage of geometrically possible reflections represented | 95.6 The percentage of geometrically possible reflections represented | 97.6 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.2 Overall redundancy for this data set. | 4.1 Redundancy for the current shell. | 3.0 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 5Z5D |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2018-01-17 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 46.1 - 1.700 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1482 / 0.1759 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 1yif |