Data quality metrics extracted from 5yyl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5YYL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL17U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL17U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-03-20
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
BUCCANEER
Refinement
_software.classification
REFMAC (5.8.0189)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
211.582 211.582 149.968 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.700
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.650 2.650
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.099 3.019
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
37682 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
20.46 -
Completeness [%]
_reflns.percent_possible_obs
99.9 -
Multiplicity
_reflns.pdbx_redundancy
8.1 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5YYL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-12-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 2.650 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2390 / 0.2750
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD