Data quality metrics extracted from 1yvp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YVP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X25
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X25
Temperature [K]
_diffrn.ambient_temp
113
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-08-24
Software
Data collection
_software.classification
HKL-2000
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing #1
_software.classification
SOLVE
Phasing #2
_software.classification
CNS
Refinement
_software.classification
CNS
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
60.30 153.65 80.56 90.0 92.8 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.10000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 2.280
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.200 2.200
  Rmerge - -
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
72908 -
  <I/σ(I)> - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.0 86.3
  Multiplicity - -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1YVP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2005-02-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2020 / 0.2380
Structure solution method
_refine.pdbx_method_to_determine_struct
MIRAS