Data quality metrics extracted from 7yse.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7YSE at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL02U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL02U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-12-01
Detector
_diffrn_detector.type
DECTRIS EIGER X 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data reduction
_software.classification
autoPROC
Data scaling
_software.classification
Aimless
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.8.0258)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
72.710 162.123 324.090 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
162.120
High resolution limit [Å]
_reflns.d_resolution_high
2.907
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.138
  Rmeas -
Rpim
_reflns.pdbx_Rpim_I_all
0.059
  Total number of observations -
Total number unique
_reflns.number_obs
85473
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.40
Completeness [%]
_reflns.percent_possible_obs
100.0
Multiplicity
_reflns.pdbx_redundancy
6.6
CC(1/2)
_reflns.pdbx_CC_half
0.990

Refinement
PDB entry ID
_entry.id
7YSE
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-08-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 2.907 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2296 / 0.2598
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
7eiv, 4mgm