Data quality metrics extracted from 6yr9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6YR9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-10-13
Detector
_diffrn_detector.type
PSI PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.99993
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
PHASER
Refinement
_software.classification
BUSTER (2.11.7 (19-MAR-2020))
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
110.222 74.538 172.546 90.00 103.11 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.99993 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
84.030 2.168
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.925 1.925
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.063 0.771
Rpim
_reflns.pdbx_Rpim_I_all
0.045 -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
48069 2402
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.30 -
Completeness [%]
_reflns.percent_possible_obs
88.0 -
Multiplicity
_reflns.pdbx_redundancy
3.4 -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.670

Refinement
PDB entry ID
_entry.id
6YR9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-04-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
84.0 - 1.925 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1917 / 0.2183
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4GU6