Data quality metrics extracted from 2ypt.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2YPT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I24
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I24
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2012-02-26
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Refinement
_software.classification
BUSTER (2.11.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
61.32 95.54 132.03 76.26 79.67 72.30
Wavelength
_diffrn_radiation_wavelength.wavelength
0.96860 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.500 3.900
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.800 3.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.050 0.690
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
26943 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.80 1.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 99.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.3 3.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2YPT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-11-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.5 - 3.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2625 / 0.2811
Structure solution method
_refine.pdbx_method_to_determine_struct
OTHER
Starting model
_refine.pdbx_starting_model
NONE