Data quality metrics extracted from 2yp5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2YP5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
77
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-02-13
Detector
_diffrn_detector.type
ADSC CCD
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.6.0117)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
100.86 100.86 386.53 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97949 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
46.960
High resolution limit [Å]
_reflns.d_resolution_high
1.790
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.110
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
71503
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.50
Completeness [%]
_reflns.percent_possible_obs
100.0
Multiplicity
_reflns.pdbx_redundancy
7.2
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
2YP5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-10-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
128.8 - 1.790 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1716 / 0.1957
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given