Data quality metrics extracted from 7yob.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7YOB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NFPSS BEAMLINE BL18U
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NFPSS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL18U
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2022-01-06
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97915
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.19_4092)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
104.062 156.484 129.209 90.00 97.97 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97915 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
127.960
High resolution limit [Å]
_reflns.d_resolution_high
2.890
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.035
Rmeas
_reflns.pdbx_Rrim_I_all
0.050
Rpim
_reflns.pdbx_Rpim_I_all
0.035
  Total number of observations -
Total number unique
_reflns.number_obs
85287
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.31
Completeness [%]
_reflns.percent_possible_obs
93.2
Multiplicity
_reflns.pdbx_redundancy
1.9
CC(1/2)
_reflns.pdbx_CC_half
0.999

Refinement
PDB entry ID
_entry.id
7YOB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-08-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
128.0 - 2.890 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1950 / 0.2493
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5L2N