Data quality metrics extracted from 6yo8.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6YO8 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-05-21
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9159
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless (0.6.2)
Phasing
_software.classification
PHASER
Refinement
_software.classification
BUSTER (2.11.7)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
158.651 99.880 84.812 90.00 93.73 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91590 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
84.474 2.122
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.086 2.086
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.061 -
Rmeas
_reflns.pdbx_Rrim_I_all
0.073 -
Rpim
_reflns.pdbx_Rpim_I_all
0.039 -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
77152 3821
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.00 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.3 97.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.4 3.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.997 0.296

Refinement
PDB entry ID
_entry.id
6YO8
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-04-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
60.9 - 2.090 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2240 / 0.2380
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2O02