Data quality metrics extracted from 4ynv.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YNV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-08-19
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97936, 0.97961, 0.94937
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
SHARP
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
49.487 49.103 80.051 98.66 97.88 100.02
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979360.979610.94937 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
20.000
High resolution limit [Å]
_reflns.d_resolution_high
2.950
Rmerge
_reflns.pdbx_Rsym_value
0.059
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
30229
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
22.40
Completeness [%]
_reflns.percent_possible_obs
99.0
Multiplicity
_reflns.pdbx_redundancy
4.0
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
4YNV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-03-11
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.9 - 2.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2273 / 0.2544
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD