Data quality metrics extracted from 6ym4.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6YM4 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PETRA III, DESY BEAMLINE P11
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
PETRA III, DESY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
P11
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2019-07-11
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0332
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.8.0258)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.984 99.260 104.191 90.00 93.37 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.03320 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
104.090
High resolution limit [Å]
_reflns.d_resolution_high
1.950
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.091
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
64335
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.26
Completeness [%]
_reflns.percent_possible_obs
98.6
Multiplicity
_reflns.pdbx_redundancy
2.9
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
6YM4
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-04-07
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.1 - 1.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1995 / 0.2475
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2YBX