Data quality metrics extracted from 4yk0.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YK0 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-07-14
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97872
Software
Data reduction
_software.classification
DENZO
Phasing
_software.classification
AMoRE
Refinement
_software.classification
REFMAC (5.8.0069)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
122.70 122.70 81.17 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97872 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
64.504 25.247 1.740
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.650 5.220 1.650
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.093 0.042 0.337
Rmeas
_reflns.pdbx_Rrim_I_all
0.105 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.048 0.023 0.177
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
257929 8044 36731
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
54790 1702 8002
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.30 10.60 2.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 97.8 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.7 4.7 4.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4YK0
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-03-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
64.5 - 1.650 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2444 / 0.2694