Data quality metrics extracted from 1ykf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YKF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE BL-6A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL-6A
Temperature [K]
_diffrn.ambient_temp
293
Detector technology
_diffrn_detector.detector
DIFFRACTOMETER
Collection date
_diffrn_detector.pdbx_collection_date
1995-04-27
Detector
_diffrn_detector.type
WEISSENBERG
Software
Data reduction
_software.classification
HKL (DENZO)
Data scaling
_software.classification
HKL (SCALEPACK)
Phasing
_software.classification
X-PLOR (3.1)
Model building
_software.classification
X-PLOR (3.1)
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
80.614 80.614 400.335 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
33.000 2.560
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.500 2.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.105 0.254
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
44669 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.30 4.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
88.4 75.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.4 1.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1YKF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1996-03-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
8.0 - 2.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2150 / 0.2670