Data quality metrics extracted from 4yjw.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YJW at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL14-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL14-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-02-04
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data scaling #1
_software.classification
XDS (November 3, 2014 BUILT=20141118)
Data scaling #2
_software.classification
XSCALE
Phasing #1
_software.classification
SHELX
Phasing #2
_software.classification
SHARP
Phasing #3
_software.classification
SHELXD
Refinement #1
_software.classification
BUSTER-TNT (2.10.2)
Refinement #2
_software.classification
BUSTER (2.10.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
70.766 70.766 67.473 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
28.652 28.652 1.860
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.800 3.870 1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.080 0.031 0.739
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.088 0.034 0.843
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
187648 19704 12263
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
16483 3073 2858
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.13 47.00 1.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.6 100.0
Multiplicity
_reflns.pdbx_redundancy
6.2 - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4YJW
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-03-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
28.7 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1732 / 0.1947
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD