Data quality metrics extracted from 4yj2.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YJ2 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-10-16
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data reduction
_software.classification
XDS (January 10, 2014)
Data scaling
_software.classification
XSCALE (January 10, 2014)
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
104.83 157.65 181.03 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
90.720 11.630 2.670
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.600 8.220 2.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.076 0.024 1.108
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.082 0.026 1.205
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 13220 43170
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
92610 2001 6771
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
17.79 63.61 1.64
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 100.0 99.1
Multiplicity
_reflns.pdbx_redundancy
6.7 - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4YJ2
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-03-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
90.7 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1882 / 0.2311
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4O2B