Data quality metrics extracted from 1yjo.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YJO at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID13
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID13
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-09-22
Detector
_diffrn_detector.type
MARRESEARCH
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
MLPHARE
Refinement
_software.classification
REFMAC (5.2.0005)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
21.153 4.870 23.130 90.00 102.93 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97500 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
80.000 1.400
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.300 1.300
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.146 0.426
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
2166 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
9.80 2.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.1 88.8
Multiplicity
_reflns.pdbx_redundancy
3.8 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1YJO
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2005-01-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
22.5 - 1.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1020 / 0.1520
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD