Data quality metrics extracted from 5yhg.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5YHG at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL18U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL18U1
Temperature [K]
_diffrn.ambient_temp
77
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2017-03-15
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9778
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0135)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
86.070 156.349 42.257 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97780 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
78.300
High resolution limit [Å]
_reflns.d_resolution_high
2.030
  Rmerge -
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
37675
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
24.90
Completeness [%]
_reflns.percent_possible_obs
99.7
Multiplicity
_reflns.pdbx_redundancy
12.1
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5YHG
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-09-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
78.3 - 2.030 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1591 / 0.2131
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given