Data quality metrics extracted from 4yhh.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YHH at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06SA
Temperature [K]
_diffrn.ambient_temp
90
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-02-26
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98000
Software
Data reduction
_software.classification
XDS (July 4, 2012)
Data scaling
_software.classification
XSCALE (July 4, 2012)
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot (0.7.2 (revision 4730))
Refinement
_software.classification
PHENIX (1.7.3_928)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
409.59 409.59 171.73 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 3.580
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.400 3.400
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.162 6.995
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
192315 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
4.45 0.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.7 84.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.5 3.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4YHH
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
48.7 - 3.417 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2282 / 0.2874
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2ZM6