Data quality metrics extracted from 4ygy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YGY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-B
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-08-07
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.03334
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
REFMAC (5.8.0073)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
125.280 78.335 63.031 90.00 112.59 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.03334 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
64.860 50.000 2.400
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.360 6.400 2.360
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.050 0.026 0.310
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
84442 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
22534 1197 958
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.30 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.9 99.1 85.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.7 3.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4YGY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
64.9 - 2.360 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1832 / 0.2462
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given