Data quality metrics extracted from 4yga.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YGA at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-12-14
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97920
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
76.920 91.067 106.641 88.71 108.27 90.26
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
73.040
High resolution limit [Å]
_reflns.d_resolution_high
2.940
Rmerge
_reflns.pdbx_Rsym_value
0.110
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
53985
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.30
Completeness [%]
_reflns.percent_possible_obs
93.5
Multiplicity
_reflns.pdbx_redundancy
3.9
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
4YGA
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
70.7 - 2.940 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2258 / 0.2619
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD