Data quality metrics extracted from 1ygs.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YGS at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CHESS BEAMLINE A1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CHESS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
A1
Temperature [K]
_diffrn.ambient_temp
110
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
1997-07-04
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing #1
_software.classification
SQUASH
Phasing #2
_software.classification
DM
Phasing #3
_software.classification
X-PLOR
Model building #1
_software.classification
DM
Model building #2
_software.classification
X-PLOR
Refinement
_software.classification
X-PLOR
General information
Spacegroup name
_symmetry.space_group_name_H-M
F 41 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
197.842 197.842 197.842 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.90800 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
99.000 2.180
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 2.100
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.039 0.162
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
18650 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
32.00 9.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.5 93.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 4.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1YGS
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1997-10-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
6.0 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2190 / 0.2790
Structure solution method
_refine.pdbx_method_to_determine_struct
MIR