Data quality metrics extracted from 2yfj.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2YFJ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-07-21
Detector
_diffrn_detector.type
MARRESEARCH MX-300
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.2.0005)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
86.979 278.125 92.956 90.00 117.65 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.90000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.080
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
210175
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
16.02
Completeness [%]
_reflns.percent_possible_obs
93.0
Multiplicity
_reflns.pdbx_redundancy
4.5
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
2YFJ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-04-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
138.7 - 2.150 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2036 / 0.2331
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 2XR8