Data quality metrics extracted from 1yfi.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YFI at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X12C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X12C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2001-04-08
Detector
_diffrn_detector.type
BRANDEIS - B4
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9040
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
CNS
Refinement
_software.classification
CNS (1.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
50.295 111.266 130.735 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.90400 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.700
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.072
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
21426
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
28.70
Completeness [%]
_reflns.percent_possible_obs
99.9
Multiplicity
_reflns.pdbx_redundancy
10.0
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1YFI
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2005-01-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.9 - 2.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2260 / 0.2740
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1SA3