Data quality metrics extracted from 4ydt.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YDT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I02
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I02
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-10-28
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.04030
Software
Data reduction
_software.classification
xia2
Data scaling
_software.classification
xia2
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
102.37 102.37 290.43 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.04030 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
75.670 3.400
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.310 3.310
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.160 0.950
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
8605 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.24 1.08
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.8 96.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.7 7.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4YDT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
75.7 - 3.310 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2549 / 0.3030