Data quality metrics extracted from 5yct.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5YCT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU FR-X
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2017-03-16
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
Aimless
Phasing
_software.classification
MOLREP
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
35.601 48.103 62.712 90.00 103.67 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
24.052
High resolution limit [Å]
_reflns.d_resolution_high
1.851
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.017
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
17514
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
24.00
Completeness [%]
_reflns.percent_possible_obs
98.8
Multiplicity
_reflns.pdbx_redundancy
4.8
CC(1/2)
_reflns.pdbx_CC_half
0.999

Refinement
PDB entry ID
_entry.id
5YCT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-09-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
24.1 - 1.851 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1922 / 0.2271
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1IV7