Data quality metrics extracted from 4ycy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4YCY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-04-18
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.918410
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (dev_1779)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
45.564 72.903 52.710 90.00 108.75 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91841 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
19.230 1.800
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.699 1.700
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.058 0.491
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
35184 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
19.50 3.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.4 98.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.2 4.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4YCY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.2 - 1.699 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1657 / 0.1977
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given