Data quality metrics extracted from 1ya5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YA5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
EMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
EMBL/DESY, HAMBURG
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X11
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2001-12-06
Detector
_diffrn_detector.type
MARRESEARCH
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
MLPHARE
Refinement
_software.classification
REFMAC (5.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
46.326 63.213 242.584 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.81170 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
14.920
High resolution limit [Å]
_reflns.d_resolution_high
2.445
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.053
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
25248
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
18.20
  Completeness [%] -
Multiplicity
_reflns.pdbx_redundancy
3.3
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1YA5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-12-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
14.9 - 2.445 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2317 / 0.2650
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD