Data quality metrics extracted from 1ya3.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1YA3 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE BM30A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BM30A
Temperature [K]
_diffrn.ambient_temp
80
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-11-21
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97950
Software
Data reduction
_software.classification
MOSFLM
Data scaling #1
_software.classification
SCALA
Data scaling #2
_software.classification
CCP4 (SCALA)
Phasing
_software.classification
BEAST
Model building
_software.classification
BEAST
Refinement
_software.classification
CNS (1.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
120.724 120.724 42.508 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97950 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
18.730
High resolution limit [Å]
_reflns.d_resolution_high
2.340
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.076
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
22222
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.60
Completeness [%]
_reflns.percent_possible_obs
81.7
Multiplicity
_reflns.pdbx_redundancy
2.5
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1YA3
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-12-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
18.7 - 2.340 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2370 / 0.2840
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
pdb entry 1Y9R