Data quality metrics extracted from 4y9w.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4Y9W at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-06-01
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91841
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.16)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.6.0117)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
48.26 57.66 54.36 90.00 92.95 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91841 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
11.368 11.376 0.850
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
0.825 3.690 0.820
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.087 0.073 0.378
Rmeas
_reflns.pdbx_Rrim_I_all
0.096 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.032 0.030 0.289
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
2124055 10579 43021
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
261700 1492 13705
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.20 8.40 1.80
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
92.3 44.9 65.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.1 7.1 3.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4Y9W
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
11.4 - 0.830 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1169 / 0.1245