Data quality metrics extracted from 1y8t.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1Y8T at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 14-ID-B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14-ID-B
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-07-30
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979, 0.94181, 0.97923
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
SHARP
Refinement
_software.classification
REFMAC (5.2.0005)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
149.584 89.067 69.408 90.00 97.55 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979000.941810.97923 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
76.700 1.990
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.850 1.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.050 0.900
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
76977 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
24.12 0.87
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.8 76.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.4 6.0
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1Y8T
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-12-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
76.7 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2265 / 0.2803
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD
Starting model
_refine.pdbx_starting_model
CRYSTAL STRUCTURE OF RV1223 (STRUCTURE of RV1223 has been SOLVED at HOME, TO BE SUBMITTED TO PDB SOON)