Data quality metrics extracted from 4y4d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4Y4D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-08-02
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.918409
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Model building
_software.classification
Coot (coot 0.6.2)
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
45.300 72.936 52.508 90.00 109.14 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91841 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
42.796 1.350
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.269 1.270
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.057 0.560
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
84800 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.21 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 99.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4Y4D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
42.8 - 1.269 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1175 / 0.1449
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given