Data quality metrics extracted from 1y48.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1Y48 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.3.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.3.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-01-24
Detector
_diffrn_detector.type
ADSC QUANTUM 4
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data reduction #1
_software.classification
MOSFLM
Data reduction #2
_software.classification
TRUNCATE
Data scaling #1
_software.classification
SCALA
Data scaling #2
_software.classification
CCP4 (SCALA
Data scaling #3
_software.classification
TRUNCATE
Phasing
_software.classification
EPMR
Refinement
_software.classification
REFMAC (5.1.24)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
93.751 93.751 185.248 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
81.650
High resolution limit [Å]
_reflns.d_resolution_high
1.840
Rmerge
_reflns.pdbx_Rsym_value
0.094
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
40315
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.10
Completeness [%]
_reflns.percent_possible_obs
99.8
Multiplicity
_reflns.pdbx_redundancy
4.4
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1Y48
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-11-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
81.7 - 1.840 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1548 / 0.1962
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1TM3