Data quality metrics extracted from 4y1z.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4Y1Z at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSRRC BEAMLINE BL13C1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSRRC
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL13C1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-07-20
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97622
Software
Data collection
_software.classification
Blu-Ice
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER (2.5.3)
Refinement
_software.classification
PHENIX (1.8.4_1496)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.036 58.268 111.100 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97622 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 30.000 2.310
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.230 4.800 2.230
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.081 0.045 0.273
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
85787 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
14016 1535 1249
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.6 99.5 89.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.1 6.0 4.5
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4Y1Z
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
25.8 - 2.230 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2040 / 0.2486
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given