Data quality metrics extracted from 4y1k.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4Y1K at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID29
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID29
Temperature [K]
_diffrn.ambient_temp
80
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-11-25
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
SCALA
Phasing #1
_software.classification
PHASER
Phasing #2
_software.classification
Coot
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
152.642 87.858 355.942 90.00 98.94 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00500 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
88.000 4.010
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.800 3.800
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.122 0.312
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
40566 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.50 3.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
87.7 77.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.2 3.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4Y1K
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-07
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
87.9 - 3.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2970 / 0.3460
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3D5K