Data quality metrics extracted from 4y12.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4Y12 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2012-02-20
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.28189
Software
Data reduction
_software.classification
XDS (2.11.4)
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
BUSTER (2.11.4)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
75.452 37.183 108.032 90.00 97.93 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.28189 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
37.370 2.000
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.073 0.774
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
23248 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.80 2.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.0 96.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.4 7.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4Y12
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-02-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
36.9 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1956 / 0.2116
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4Y0X