Data quality metrics extracted from 5xrr.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5XRR at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL17U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL17U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-10-28
Detector
_diffrn_detector.type
RAYONIX MX-225
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9791
Software
Data scaling
_software.classification
XSCALE
Refinement
_software.classification
PHENIX (1.11.1_2575)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
28.24 30.27 4.78 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97910 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.649 20.649 1.600
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.500 10.000 1.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.422 0.248 0.821
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.453 0.270 0.881
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
9186 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
1197 6 194
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
3.37 6.17 1.52
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.3 100.0 75.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.7 6.7 7.3
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.972 - 0.711

Refinement
PDB entry ID
_entry.id
5XRR
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-06-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.6 - 1.503 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2040 / 0.2407