Data quality metrics extracted from 5xif.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5XIF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE BM14
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BM14
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-05-06
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95373
Software
Data reduction #1
_software.classification
XDS
Data reduction #2
_software.classification
SCALA
Data scaling
_software.classification
Aimless (0.5.2)
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.7.0029)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
76.68 86.43 97.16 90.00 106.46 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95373 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
53.410 2.570
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.480 2.480
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.159 1.495
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.054 0.517
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
42796 4075
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
13.60 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.0 95.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.5 8.2
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.997 0.575

Refinement
PDB entry ID
_entry.id
5XIF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-04-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
53.4 - 2.480 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1933 / 0.2495
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4TWA