Data quality metrics extracted from 5xdp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5XDP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-10-08
Detector
_diffrn_detector.type
DECTRIS PILATUS 200K
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Refinement
_software.classification
PHENIX (1.10.1_2155: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
25.938 26.163 46.540 103.03 94.16 99.65
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
25.410
High resolution limit [Å]
_reflns.d_resolution_high
2.376
  Rmerge -
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
5120
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
1.28
Completeness [%]
_reflns.percent_possible_obs
84.0
Multiplicity
_reflns.pdbx_redundancy
1.7
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5XDP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-03-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
25.4 - 2.376 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2342 / 0.2710
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1UBQ