Data quality metrics extracted from 4xd7.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4XD7 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE BL-6A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL-6A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-11-22
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97879
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Phasing
_software.classification
AMoRE
Refinement
_software.classification
PHENIX (1.7_650)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 41 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
233.395 233.395 303.964 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97879 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
69.200 4.110
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.900 3.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.100 0.520
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
38420 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
14.70 3.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 97.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.6 5.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4XD7
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2014-12-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 3.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2498 / 0.2817