Data quality metrics extracted from 1xd6.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1XD6 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE BL-6B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL-6B
Temperature [K]
_diffrn.ambient_temp
298.0
Detector technology
_diffrn_detector.detector
DIFFRACTOMETER
Collection date
_diffrn_detector.pdbx_collection_date
2001-04-15
Detector
_diffrn_detector.type
WEISSENBERG
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
AMoRE
Refinement
_software.classification
REFMAC (5.1.24)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
78.07 97.48 36.12 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
18.930
High resolution limit [Å]
_reflns.d_resolution_high
2.000
Rmerge
_reflns.pdbx_Rsym_value
0.067
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
9217
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.10
Completeness [%]
_reflns.percent_possible_obs
95.5
  Multiplicity -
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1XD6
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-09-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
18.9 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1986 / 0.2383
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given