Data quality metrics extracted from 7x5j.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7X5J at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL18U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL18U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-07-12
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.978
Software
Phasing
_software.classification
PHENIX
Refinement #1
_software.classification
REFMAC (5.8.0267)
Refinement #2
_software.classification
REFMAC (5.8.0267)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
107.623 224.972 152.371 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97800 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
152.370 152.370 2.140
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 11.500 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.212 0.129 1.757
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.229 0.138 1.896
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.086 0.050 0.706
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
105199 105218 105218
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.10 - -
Completeness [%]
_reflns.percent_possible_obs
97.9 - -
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
13.4 12.6 13.8
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.990 0.985 0.699

Refinement
PDB entry ID
_entry.id
7X5J
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-03-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
97.3 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2001 / 0.2469
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3OSU