Data quality metrics extracted from 5wqd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5WQD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-F
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-F
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-03-09
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9787
Software
Data collection
_software.classification
HKL-2000
Data processing
_software.classification
HKL-2000
Data reduction #1
_software.classification
HKL-2000
Data reduction #2
_software.classification
HKL
Data scaling #1
_software.classification
HKL-2000
Data scaling #2
_software.classification
HKL
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
PHENIX (1.11.1_2575: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
144.616 153.267 108.029 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97870 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 3.050
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.000 8.130 3.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.080 0.024 0.437
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
47897 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.70 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.4 99.9 79.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.5 8.5 3.4
CC(1/2)
_reflns_shell.pdbx_CC_half
- 1.000 0.938

Refinement
PDB entry ID
_entry.id
5WQD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-11-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
48.2 - 3.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2326 / 0.2844
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3BUA