Data quality metrics extracted from 5wkb.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5WKB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
ELECTRON CRYSTALLOGRAPHY
Source type
_diffrn_source.source
ELECTRON MICROSCOPE
Source details
_diffrn_source.type
TECNAI F20 TEM
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2016-08-26
Detector
_diffrn_detector.type
TVIPS F416 CMOS CAMERA
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.0251
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
42.77 17.42 4.90 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.02510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
21.390 21.390 1.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.000 4.490 1.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.283 0.108 0.993
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.299 0.114 1.085
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
18942 220 529
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
2004 26 110
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
4.64 12.27 1.07
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
88.7 74.3 78.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.5 8.5 4.8
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.992 - 0.527

Refinement
PDB entry ID
_entry.id
5WKB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-07-24
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
21.4 - 1.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2201 / 0.2697
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING