Data quality metrics extracted from 5wbf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5WBF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-04-10
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5498
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless (3.3.21)
Phasing
_software.classification
PHASER
Model building
_software.classification
PHENIX (1.9_1692)
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
189.33 103.17 61.79 90.00 98.32 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54980 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.570 30.570 2.310
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.190 6.930 2.190
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.062 0.037 0.280
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.073 0.044 0.329
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.038 0.023 0.170
Total number of observations
_reflns_shell.number_measured_all
- 6092 30803
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
59028 1763 8472
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.meanI_over_sigI_obs
13.30 22.30 5.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.6 89.9 96.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.6 3.5 3.6
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.995 0.996 0.904

Refinement
PDB entry ID
_entry.id
5WBF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-06-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.6 - 2.190 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1818 / 0.2179
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD