Data quality metrics extracted from 5w5r.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5W5R at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
77
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-03-15
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
93.400 140.993 228.209 72.00 78.18 90.01
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.780
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.750 4.750 1.750
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.031 0.547
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.093 0.044 0.772
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.066 0.031 0.544
Total number of observations
_reflns.pdbx_number_measured_all
2012923 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
1029422 46368 51650
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.4 85.9 95.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.0 1.9 2.0
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.995 0.672

Refinement
PDB entry ID
_entry.id
5W5R
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-06-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.9 - 1.754 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2008 / 0.2280
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given