Data quality metrics extracted from 5w5b.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5W5B at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X4C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X4C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-10-07
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing #1
_software.classification
SOLVE
Phasing #2
_software.classification
RESOLVE (2.15)
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
55.109 72.530 53.939 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.830
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.800 4.880 1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.057 0.057 0.647
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
107589 - -
Total number unique
_reflns.number_obs
20631 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.70 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.5 100.0 94.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 14.3 3.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5W5B
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-06-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
43.9 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1733 / 0.2185
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD